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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
67/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Prochlorococcus marinus subsp. pastoris str. CCMP1986
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
1315216252
reported
total reads
17305477
reported
n content pct
0.595
measured
pct q20 bases
87.1
measured
pct q30 bases
82.9
measured
gc content pct
38.6
measured
mean read length
76
measured
mean base quality
33.6
measured
adapter content pct
0
measured
duplication rate pct
78.76
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 67/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
82.9
measured
×1
65%
mean base quality
33.6
measured
×0.6
93%
adapter content pct
0
measured
×0.4
100%
duplication rate pct
78.76
measured
×0.4
0%
QC cost
23 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0