SRR1046242

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

23/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

human gut metagenome

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 484195212 reported

total reads 2397006 reported

n content pct 0.041 measured

pct q20 bases 70.4 measured

pct q30 bases 64.5 measured

gc content pct 54.9 measured

mean read length 101 measured

mean base quality 26 measured

adapter content pct 17.05 measured

duplication rate pct 11.92 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 23/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 64.5 measured ×1 0%

duplication rate pct 11.92 measured ×0.5 88%

adapter content pct 17.05 measured ×0.4 0%

QC cost 46 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0