SRR1048128

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Tribolium castaneum bulk RNA-seq from HiSeq 2000 totaling 6.6 billion high-quality bases (91.7% Q20), delivering comprehensive transcriptome coverage for this model beetle to address developmental and comparative genomics questions; balanced GC content (45%) and read count support both abundant and moderate-expression gene analysis.

Data type / assay

bulk-RNA-seq

Organism

Tribolium castaneum

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 6621725438 reported

total reads 32780819 reported

n content pct 0.025 measured

pct q20 bases 91.7 measured

pct q30 bases 84.8 measured

gc content pct 45 measured

mean read length 101 measured

mean base quality 33.5 measured

adapter content pct 0.48 measured

duplication rate pct 26.77 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84.8 measured ×1 74%

mean base quality 33.5 measured ×0.6 92%

adapter content pct 0.48 measured ×0.4 100%

duplication rate pct 26.77 measured ×0.4 100%

QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0