SRR1048131

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

85/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Tribolium castaneum RNA-seq from HiSeq 2000 delivering 6.6 billion bases (91% Q20), comparable depth to SRR1048128 and suitable for replication studies or time-course experiments in this genetically tractable insect; consistent metrics across paired samples support reliable differential expression comparisons.

Data type / assay

bulk-RNA-seq

Organism

Tribolium castaneum

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 6638657078 reported

total reads 32864639 reported

n content pct 0.025 measured

pct q20 bases 91 measured

pct q30 bases 84.1 measured

gc content pct 44.5 measured

mean read length 101 measured

mean base quality 33.3 measured

adapter content pct 0.45 measured

duplication rate pct 27.55 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 85/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84.1 measured ×1 71%

mean base quality 33.3 measured ×0.6 88%

adapter content pct 0.45 measured ×0.4 100%

duplication rate pct 27.55 measured ×0.4 100%

QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0