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SRR1048544
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
95/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Gallus gallus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
10.54
measured
checksum ok
yes
reported
total bases
3872164866
reported
total reads
19169133
reported
n content pct
0.002
measured
pct q20 bases
94.4
measured
pct q30 bases
87.5
measured
pct reads q30
87.2
measured
sampled bases
58766345
measured
sampled reads
581845
measured
gc content pct
47.6
measured
polyg tail pct
0.01
measured
read length sd
0
measured
quality dropoff
-9.5
measured
read length max
101
measured
read length min
101
measured
read length n50
101
measured
max base quality
41
measured
mean read length
101
measured
max n pct per pos
0.04
measured
mean base quality
34.7
measured
pct reads lt 100bp
0
measured
read length median
101
measured
adapter content pct
0.01
measured
median read quality
36.6
measured
duplication rate pct
9.64
measured
overrepresented top pct
0.02
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 95/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
87.5
measured
×1
88%
mean base quality
34.7
measured
×0.6
100%
adapter content pct
0.01
measured
×0.4
100%
duplication rate pct
9.64
measured
×0.4
100%
QC cost
17 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0