SRR10503169

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

RNA-Seq (Aedes aegypti) achieving perfect grade A (100/100) with exemplary metrics across all dimensions: Q30=96.6%, mean base quality=36.9, low duplication (17.31%, all measured), minimal adapter (0.12%, measured), and large depth (16.7M reads, 101bp length). Ideal dataset for reuse in any expression-based application.

Data type / assay

bulk-RNA-seq

Organism

Aedes aegypti

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3379677756 reported

total reads 16731078 reported

n content pct 0.006 measured

pct q20 bases 99.2 measured

pct q30 bases 96.6 measured

gc content pct 48.1 measured

mean read length 101 measured

mean base quality 36.9 measured

adapter content pct 0.12 measured

duplication rate pct 17.31 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.6 measured ×1 100%

mean base quality 36.9 measured ×0.6 100%

adapter content pct 0.12 measured ×0.4 100%

duplication rate pct 17.31 measured ×0.4 100%

QC cost 31 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0