Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR1054007

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

69/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Tea plant bulk RNA-seq with below-threshold base quality (grade D). Only 79.3% of bases meet Q30, falling just below the standard 80% minimum; combined with mean quality of 31.9, this suggests sequencing chemistry or instrument issues that will propagate errors into downstream calls.

Data type / assay
bulk-RNA-seq
Organism
Camellia sinensis
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4597287000 reported
total reads 22986435 reported
n content pct 0.032 measured
pct q20 bases 87 measured
pct q30 bases 79.3 measured
gc content pct 44.7 measured
mean read length 100 measured
mean base quality 31.9 measured
adapter content pct 0.03 measured
duplication rate pct 7.44 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 69/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 79.3 measured ×1 47%
mean base quality 31.9 measured ×0.6 65%
adapter content pct 0.03 measured ×0.4 100%
duplication rate pct 7.44 measured ×0.4 100%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0