SRR10605672

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

150bp short-read bulk RNA-seq from Anopheles gambiae at excellent quality (grade A) with exceptional measured duplication at 5.46%, confirming transcript-level authenticity with minimal PCR bias. Measured Q30 at 93.4% and very high depth (137M reads) make this dataset robust for isoform-level and differential-expression studies.

Data type / assay

bulk-RNA-seq

Organism

Anopheles gambiae

Instrument

NextSeq 550

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 41432901292 reported

total reads 137616910 reported

n content pct 0.001 measured

pct q20 bases 95.5 measured

pct q30 bases 93.4 measured

gc content pct 43.6 measured

mean read length 150.5 measured

mean base quality 34.4 measured

adapter content pct 0 measured

duplication rate pct 5.46 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.4 measured ×1 100%

mean base quality 34.4 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 5.46 measured ×0.4 100%

QC cost 41 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0