SRR10605673

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Anopheles gambiae RNA-seq on NextSeq 550 reaching 39.6 billion bases with exceptional quality metrics (95.5% Q20, 0.002% N-content), enabling deep malaria vector transcriptomics for studying infection responses, sex differences, or tissue-specific expression at high sensitivity; suitable for detecting low-abundance isoforms and subtle expression shifts.

Data type / assay

bulk-RNA-seq

Organism

Anopheles gambiae

Instrument

NextSeq 550

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 39607932877 reported

total reads 131552296 reported

n content pct 0.002 measured

pct q20 bases 95.5 measured

pct q30 bases 93.3 measured

gc content pct 44 measured

mean read length 150.5 measured

mean base quality 34.4 measured

adapter content pct 0 measured

duplication rate pct 5.65 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.3 measured ×1 100%

mean base quality 34.4 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 5.65 measured ×0.4 100%

QC cost 31 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0