SRR1060891

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Aedes aegypti bulk RNA-seq with borderline base quality (grade B). Q30 at 84.2% sits at the minimum acceptable threshold with mean quality 33.8; still usable for robust genes and well-replicated designs, but risks missing low-confidence sites.

Data type / assay

bulk-RNA-seq

Organism

Aedes aegypti

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 109606100 reported

total reads 1096061 reported

n content pct 0.29 measured

pct q20 bases 90.3 measured

pct q30 bases 84.2 measured

gc content pct 46.5 measured

mean read length 50 measured

mean base quality 33.8 measured

adapter content pct 0.29 measured

duplication rate pct 17.85 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84.2 measured ×1 71%

mean base quality 33.8 measured ×0.6 97%

adapter content pct 0.29 measured ×0.4 100%

duplication rate pct 17.85 measured ×0.4 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0