SRR1060931

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

93/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

RNA-Seq with grade A (93/100), limited by duplication_rate_pct=48.19 (measured, scoring 60/100); Q30=98% and mean base quality=38.8 are both perfect (measured). Duplication from 50bp reads on older platform is acceptable; minimal adapter (0.05%) and excellent base quality make this suitable for reuse in expression studies.

Data type / assay

bulk-RNA-seq

Organism

Aedes aegypti

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 226060900 reported

total reads 2260609 reported

n content pct 0.003 measured

pct q20 bases 99.4 measured

pct q30 bases 98 measured

gc content pct 48.2 measured

mean read length 50 measured

mean base quality 38.8 measured

adapter content pct 0.05 measured

duplication rate pct 48.19 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 93/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98 measured ×1 100%

mean base quality 38.8 measured ×0.6 100%

adapter content pct 0.05 measured ×0.4 100%

duplication rate pct 48.19 measured ×0.4 60%

QC cost 10 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0