SRR1060970

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Short-read bulk RNA-seq from Aedes aegypti at excellent quality (grade A). Measured Q30 bases at 96.5% and mean base quality 38.2 provide high-confidence basecalls for variant and expression studies; moderate measured duplication (26.83%) and minimal adapter content (0.1%) support data authenticity across diverse applications.

Data type / assay

bulk-RNA-seq

Organism

Aedes aegypti

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 280011400 reported

total reads 2800114 reported

n content pct 0.275 measured

pct q20 bases 98.6 measured

pct q30 bases 96.5 measured

gc content pct 46.2 measured

mean read length 50 measured

mean base quality 38.2 measured

adapter content pct 0.1 measured

duplication rate pct 26.83 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.5 measured ×1 100%

mean base quality 38.2 measured ×0.6 100%

adapter content pct 0.1 measured ×0.4 100%

duplication rate pct 26.83 measured ×0.4 100%

QC cost 37 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0