SRR1060971

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Aedes aegypti bulk RNA-seq (grade A, 99/100). Q30 at 97.6% and mean quality 38.6 ensure high fidelity; minor duplication (33%) is the only minor deviation, making this dataset excellent for reuse across quantification and discovery studies.

Data type / assay

bulk-RNA-seq

Organism

Aedes aegypti

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 339022000 reported

total reads 3390220 reported

n content pct 0.013 measured

pct q20 bases 99.3 measured

pct q30 bases 97.6 measured

gc content pct 46.3 measured

mean read length 50 measured

mean base quality 38.6 measured

adapter content pct 0.12 measured

duplication rate pct 33.36 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.6 measured ×1 100%

mean base quality 38.6 measured ×0.6 100%

adapter content pct 0.12 measured ×0.4 100%

duplication rate pct 33.36 measured ×0.4 93%

QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0