SRR1060972

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Aedes aegypti RNA-seq on Genome Analyzer IIx generating 330 million bases at outstanding quality (99% Q20), enabling high-sensitivity transcript profiling for this disease vector despite moderate total sequencing depth.

Data type / assay

bulk-RNA-seq

Organism

Aedes aegypti

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 330404200 reported

total reads 3304042 reported

n content pct 0.005 measured

pct q20 bases 99 measured

pct q30 bases 96.4 measured

gc content pct 45.7 measured

mean read length 50 measured

mean base quality 38.1 measured

adapter content pct 0.1 measured

duplication rate pct 32.99 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.4 measured ×1 100%

mean base quality 38.1 measured ×0.6 100%

adapter content pct 0.1 measured ×0.4 100%

duplication rate pct 32.99 measured ×0.4 93%

QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0