SRR1060975

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

RNA-Seq with grade A (98/100), limited only by duplication_rate_pct=34.77 (measured, scoring 89/100); Q30=98.2% and mean base quality=39 are both perfect (measured). Low duplication despite 50bp platform chemistry, minimal adapter (0.09%), and excellent base quality make this dataset highly suitable for reuse.

Data type / assay

bulk-RNA-seq

Organism

Aedes aegypti

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 173952200 reported

total reads 1739522 reported

n content pct 0.001 measured

pct q20 bases 99.3 measured

pct q30 bases 98.2 measured

gc content pct 46.5 measured

mean read length 50 measured

mean base quality 39 measured

adapter content pct 0.09 measured

duplication rate pct 34.77 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.2 measured ×1 100%

mean base quality 39 measured ×0.6 100%

adapter content pct 0.09 measured ×0.4 100%

duplication rate pct 34.77 measured ×0.4 89%

QC cost 39 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0