SRR1060998

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Genome Analyzer IIx RNA-seq from Aedes aegypti generated 1.4M reads across 145M bases with good Q-scores (95.6% Q20, 91.3% Q30) but limited depth. The 44.9% GC is normal. Reuse for targeted expression studies of highly expressed genes is possible; caveat that shallow coverage and legacy platform preclude comprehensive transcriptome quantitation.

Data type / assay

bulk-RNA-seq

Organism

Aedes aegypti

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 145384000 reported

total reads 1453840 reported

n content pct 0.147 measured

pct q20 bases 95.6 measured

pct q30 bases 91.3 measured

gc content pct 44.9 measured

mean read length 50 measured

mean base quality 36.3 measured

adapter content pct 0.2 measured

duplication rate pct 20.35 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.3 measured ×1 100%

mean base quality 36.3 measured ×0.6 100%

adapter content pct 0.2 measured ×0.4 100%

duplication rate pct 20.35 measured ×0.4 100%

QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0