Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR1061024

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Illumina Genome Analyzer IIx RNA-seq of Aedes aegypti capturing ~202 million bases at excellent quality (96.5% Q20), providing increased depth for this disease vector to profile tissue-specific or condition-dependent transcriptomes with better dynamic range than shallow replicate experiments.

Data type / assay
bulk-RNA-seq
Organism
Aedes aegypti
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 202355600 reported
total reads 2023556 reported
n content pct 0.104 measured
pct q20 bases 96.5 measured
pct q30 bases 93.3 measured
gc content pct 45.1 measured
mean read length 50 measured
mean base quality 37.1 measured
adapter content pct 0.08 measured
duplication rate pct 29.38 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.3 measured ×1 100%
mean base quality 37.1 measured ×0.6 100%
adapter content pct 0.08 measured ×0.4 100%
duplication rate pct 29.38 measured ×0.4 100%
QC cost 31 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0