Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR1061094

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Genome Analyzer IIx RNA-seq from Aedes aegypti generated 2.3M reads spanning 234M bases with 99.4% Q20 and 97.9% Q30, maintaining high per-base quality despite limited sequencing throughput. The 47.7% GC is normal for mosquitoes. Reuse for targeted gene-expression validation is feasible; caveat that platform constraints and shallow coverage preclude comprehensive transcriptomics or detailed isoform analysis.

Data type / assay
bulk-RNA-seq
Organism
Aedes aegypti
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 234277100 reported
total reads 2342771 reported
n content pct 0.004 measured
pct q20 bases 99.4 measured
pct q30 bases 97.9 measured
gc content pct 47.7 measured
mean read length 50 measured
mean base quality 38.7 measured
adapter content pct 0.12 measured
duplication rate pct 30.93 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.9 measured ×1 100%
mean base quality 38.7 measured ×0.6 100%
adapter content pct 0.12 measured ×0.4 100%
duplication rate pct 30.93 measured ×0.4 98%
QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0