Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
← Dataset search

SRR1061192

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Genome Analyzer IIx bulk RNA-seq from Aedes aegypti generates ~887k short reads (88.7 million bases, 84.3% Q30), shallow coverage with moderate quality concerns. This undersized dataset is restricted to validating high-abundance transcripts or candidate genes; genome-wide profiling is unreliable. Reuse requires pooling with other samples or focusing on pre-defined gene sets for robust expression quantification in Aedes.

Data type / assay
bulk-RNA-seq
Organism
Aedes aegypti
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 88667900 reported
total reads 886679 reported
n content pct 0.158 measured
pct q20 bases 91.1 measured
pct q30 bases 84.3 measured
gc content pct 44.2 measured
mean read length 50 measured
mean base quality 34.3 measured
adapter content pct 0.19 measured
duplication rate pct 14.15 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84.3 measured ×1 72%
mean base quality 34.3 measured ×0.6 100%
adapter content pct 0.19 measured ×0.4 100%
duplication rate pct 14.15 measured ×0.4 100%
QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0