Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR1061243

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Genome Analyzer IIx bulk RNA-seq from Aedes aegypti yields ~1.65 million short reads (165 million bases, 98.1% Q30), moderate depth at high quality for reliable transcript detection. This dataset supports differential expression analysis and abundance quantification in the dengue vector. Bulk sequencing limits cellular context; reuse is suitable for tissue-level or condition-level transcriptomic studies exploring Aedes gene expression patterns.

Data type / assay
bulk-RNA-seq
Organism
Aedes aegypti
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 165443600 reported
total reads 1654436 reported
n content pct 0.001 measured
pct q20 bases 99.2 measured
pct q30 bases 98.1 measured
gc content pct 45 measured
mean read length 50 measured
mean base quality 38.9 measured
adapter content pct 0.14 measured
duplication rate pct 35.38 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.1 measured ×1 100%
mean base quality 38.9 measured ×0.6 100%
adapter content pct 0.14 measured ×0.4 100%
duplication rate pct 35.38 measured ×0.4 88%
QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0