SRR1061391

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

32/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

human gut metagenome

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 352317896 reported

total reads 1744148 reported

n content pct 0.033 measured

pct q20 bases 83.9 measured

pct q30 bases 73.9 measured

gc content pct 58.3 measured

mean read length 101 measured

mean base quality 29.8 measured

adapter content pct 0.38 measured

duplication rate pct 74.68 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 32/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 73.9 measured ×1 20%

mean base quality 29.8 measured ×0.6 30%

adapter content pct 0.38 measured ×0.4 100%

duplication rate pct 74.68 measured ×0.4 1%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0