SRR1066663

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

50/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

amplicon

Organism

wastewater metagenome

Instrument

454 GS FLX

Platform

LS454

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 12545315 reported

total reads 23758 reported

n content pct 0.192 measured

pct q20 bases 88.4 measured

pct q30 bases 75 measured

gc content pct 54.4 measured

mean read length 528 measured

mean base quality 33.7 measured

adapter content pct 0 measured

duplication rate pct 84.35 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 50/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 75 measured ×1 25%

adapter content pct 0 measured ×0.5 100%

QC cost 4 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0