Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR10852826

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

93/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

HiSeq 2500 bulk RNA-seq from the dunnock Cinclosoma clarum yields ~36 million short reads (3.6 billion bases, 97% Q30), high coverage at excellent quality enabling comprehensive transcriptome profiling. This dataset supports sensitive differential expression studies in this Australian songbird. Bulk sequencing lacks cell-type specificity; reuse is excellent for tissue-level or developmental transcriptomic studies of avian biology and behavior.

Data type / assay
bulk-RNA-seq
Organism
Cinclosoma clarum
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 3595975500 reported
total reads 35959755 reported
n content pct 0.003 measured
pct q20 bases 98.6 measured
pct q30 bases 97 measured
gc content pct 46.5 measured
mean read length 50 measured
mean base quality 36.9 measured
adapter content pct 0 measured
duplication rate pct 48.53 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 93/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97 measured ×1 100%
mean base quality 36.9 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 48.53 measured ×0.4 59%
QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0