Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR10852855

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

90/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina HiSeq 2500 bulk RNA-seq from Butorides striata generates 52.2 million short reads totaling 5.2 billion bases at very high quality (97.8% ≥Q20, 95.3% ≥Q30). The minimal N content and notably high 54.5% GC composition are distinctive. The substantial read count enables robust gene expression quantification and comprehensive transcriptome profiling in this bird species.

Data type / assay
bulk-RNA-seq
Organism
Butorides striata
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 5215274500 reported
total reads 52152745 reported
n content pct 0.006 measured
pct q20 bases 97.8 measured
pct q30 bases 95.3 measured
gc content pct 54.5 measured
mean read length 50 measured
mean base quality 35.7 measured
adapter content pct 0 measured
duplication rate pct 56.36 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 90/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.3 measured ×1 100%
mean base quality 35.7 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 56.36 measured ×0.4 41%
QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0