Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
← Dataset search

SRR10852908

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

90/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina HiSeq 2500 bulk RNA-seq from Stenostira scita generates 45.8 million short reads totaling 4.7 billion bases at very high quality (98.1% ≥Q20, 96% ≥Q30). The minimal N content and 48.8% GC composition support robust transcript quantification. The substantial read depth enables comprehensive transcriptome profiling and differential expression analysis in this bird species.

Data type / assay
bulk-RNA-seq
Organism
Stenostira scita
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4667896278 reported
total reads 45763689 reported
n content pct 0.005 measured
pct q20 bases 98.1 measured
pct q30 bases 96 measured
gc content pct 48.8 measured
mean read length 51 measured
mean base quality 36.6 measured
adapter content pct 0 measured
duplication rate pct 56.13 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 90/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96 measured ×1 100%
mean base quality 36.6 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 56.13 measured ×0.4 42%
QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0