Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR11085583

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

97/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

HiSeq 2500 bulk RNA-seq from the hornworm Manduca sexta yields ~8.95 million short reads (1.12 billion bases, 95.1% Q30), moderate to good coverage enabling transcript abundance profiling in this Lepidoptera model. This dataset supports differential expression studies and detection of moderate to abundant genes. Bulk sequencing lacks cell-type specificity; reuse suits tissue-level or developmental transcriptomic studies of insect biology and metabolism.

Data type / assay
bulk-RNA-seq
Organism
Manduca sexta
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1118646125 reported
total reads 8949169 reported
n content pct 0.008 measured
pct q20 bases 97.6 measured
pct q30 bases 95.1 measured
gc content pct 42.3 measured
mean read length 125 measured
mean base quality 36.6 measured
adapter content pct 0.91 measured
duplication rate pct 39.09 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 97/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.1 measured ×1 100%
mean base quality 36.6 measured ×0.6 100%
adapter content pct 0.91 measured ×0.4 100%
duplication rate pct 39.09 measured ×0.4 80%
QC cost 38 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0