SRR11092057

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Severe acute respiratory syndrome coronavirus 2

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1456539874 reported

total reads 5184909 reported

n content pct 0.075 measured

pct q20 bases 96.4 measured

pct q30 bases 95.5 measured

gc content pct 46.4 measured

mean read length 140.3 measured

mean base quality 37 measured

adapter content pct 0.14 measured

duplication rate pct 3.78 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.5 measured ×1 100%

mean base quality 37 measured ×0.6 100%

adapter content pct 0.14 measured ×0.4 100%

duplication rate pct 3.78 measured ×0.4 100%

QC cost 35 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0