← Dataset search
Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
77/100 · CStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Senna tora
Instrument
Sequel
Platform
PACBIO_SMRT
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
6.42
measured
checksum ok
yes
reported
total bases
4878858074
reported
total reads
814359
reported
n content pct
0
measured
sampled bases
170435198
measured
sampled reads
25156
measured
gc content pct
38.5
measured
polyg tail pct
0.21
measured
read length sd
6686.5
measured
read length max
55481
measured
read length min
50
measured
read length n50
12414
measured
max base quality
0
measured
mean read length
6775.1
measured
max n pct per pos
0
measured
pct reads lt 100bp
1
measured
read length median
4642.5
measured
adapter content pct
0
measured
duplication rate pct
0
measured
overrepresented top pct
0
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 77/100
The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
read length n50
12414
measured
×1
55%
duplication rate pct
0
measured
×0.5
100%
adapter content pct
0
measured
×0.4
100%
QC cost
30 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0