Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR11209373

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

97/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina MiSeq bulk RNA-seq from Aedes aegypti comprises 23.5 million short reads totaling 3.5 billion bases at good quality (96.6% ≥Q20, 95% ≥Q30). The minimal N content and 48.1% GC composition support transcript quantification. The substantial read depth enables comprehensive gene expression profiling and differential expression analysis in this disease vector mosquito.

Data type / assay
bulk-RNA-seq
Organism
Aedes aegypti
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 3528387900 reported
total reads 23522586 reported
n content pct 0.001 measured
pct q20 bases 96.6 measured
pct q30 bases 95 measured
gc content pct 48.1 measured
mean read length 75 measured
mean base quality 34.6 measured
adapter content pct 0.03 measured
duplication rate pct 37.67 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 97/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95 measured ×1 100%
mean base quality 34.6 measured ×0.6 100%
adapter content pct 0.03 measured ×0.4 100%
duplication rate pct 37.67 measured ×0.4 83%
QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0