Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR11216113

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

76/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Deep whole-genome shotgun sequencing of the legume Senna tora via HiSeq 2500 (~213.7 million reads, ~43.2 billion bases, 89% Q30). Exceptional sequencing depth enables de novo genome assembly and variant discovery; moderate base quality requires careful filtering for precision genotyping.

Data type / assay
WGS
Organism
Senna tora
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 43173249516 reported
total reads 213728958 reported
n content pct 0.008 measured
pct q20 bases 95 measured
pct q30 bases 89 measured
gc content pct 38.1 measured
mean read length 101 measured
mean base quality 35 measured
adapter content pct 22.79 measured
duplication rate pct 7.38 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 76/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89 measured ×1 95%
duplication rate pct 7.38 measured ×0.5 100%
adapter content pct 22.79 measured ×0.4 0%
QC cost 35 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0