Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR11232076

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

NovaSeq 6000 bulk RNA-seq from Aedes aegypti generates ~27.6 million short reads (8.28 billion bases, 94.2% Q30), high coverage at good quality enabling comprehensive gene expression profiling in this disease vector. This dataset supports sensitive differential expression studies. Bulk sequencing lacks cellular resolution; reuse is ideal for tissue-level or condition-level transcriptomic studies of Aedes.

Data type / assay
bulk-RNA-seq
Organism
Aedes aegypti
Instrument
Illumina NovaSeq 6000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 8281035900 reported
total reads 27603453 reported
n content pct 0.001 measured
pct q20 bases 97.9 measured
pct q30 bases 94.2 measured
gc content pct 49.4 measured
mean read length 150 measured
mean base quality 36 measured
adapter content pct 2.23 measured
duplication rate pct 60.18 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.2 measured ×1 100%
mean base quality 36 measured ×0.6 100%
adapter content pct 2.23 measured ×0.4 99%
duplication rate pct 60.18 measured ×0.4 33%
QC cost 19 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0