Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRR11252285

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

76/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

NextSeq 500 bulk RNA-seq from Aedes aegypti generates ~23.6 million short reads (1.78 billion bases, 93.1% Q30), substantial coverage enabling comprehensive gene expression profiling in this disease vector. This dataset supports differential expression analysis and detection of moderate to low-abundance transcripts. Bulk sequencing limits cellular resolution; reuse is ideal for tissue-level or condition-level transcriptomic studies of Aedes.

Data type / assay
bulk-RNA-seq
Organism
Aedes aegypti
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1783793820 reported
total reads 23610521 reported
n content pct 0.009 measured
pct q20 bases 96 measured
pct q30 bases 93.1 measured
gc content pct 48.6 measured
mean read length 75.6 measured
mean base quality 34.3 measured
adapter content pct 96.3 measured
duplication rate pct 51.09 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 76/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.1 measured ×1 100%
mean base quality 34.3 measured ×0.6 100%
adapter content pct 96.3 measured ×0.4 0%
duplication rate pct 51.09 measured ×0.4 53%
QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0