SRR11292942

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

92/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

NextSeq 500 bulk RNA-seq from the malaria mosquito Anopheles gambiae (~20.8 million reads, ~6.3 billion bases, 91.1% Q30). High read depth and good base quality support comprehensive gene-expression profiling and moderate isoform discovery in this well-annotated disease vector.

Data type / assay

bulk-RNA-seq

Organism

Anopheles gambiae

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 6288871556 reported

total reads 20824078 reported

n content pct 0.007 measured

pct q20 bases 95.9 measured

pct q30 bases 91.1 measured

gc content pct 45.3 measured

mean read length 151 measured

mean base quality 34 measured

adapter content pct 10.33 measured

duplication rate pct 14.83 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 92/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.1 measured ×1 100%

mean base quality 34 measured ×0.6 100%

adapter content pct 10.33 measured ×0.4 54%

duplication rate pct 14.83 measured ×0.4 100%

QC cost 37 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0