SRR11297496

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

91/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

NextSeq 500 bulk RNA-seq from Aedes aegypti (~44.9 million reads, ~3.8 billion bases, 92.2% Q30). High read depth with good base quality supports comprehensive gene-expression profiling and detection of moderately expressed transcripts in the yellow fever mosquito.

Data type / assay

bulk-RNA-seq

Organism

Aedes aegypti

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3817741680 reported

total reads 44914608 reported

n content pct 0.003 measured

pct q20 bases 94.6 measured

pct q30 bases 92.2 measured

gc content pct 39.7 measured

mean read length 85 measured

mean base quality 34 measured

adapter content pct 0.02 measured

duplication rate pct 53.75 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 91/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.2 measured ×1 100%

mean base quality 34 measured ×0.6 100%

adapter content pct 0.02 measured ×0.4 100%

duplication rate pct 53.75 measured ×0.4 47%

QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0