Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR11297499

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

NextSeq 500 bulk RNA-seq from Aedes aegypti produces ~25 million short reads (2.12 billion bases, 90.3% Q30), substantial coverage enabling comprehensive gene expression profiling in this disease vector. This dataset supports differential expression analysis and detection of moderate to low-abundance transcripts. Bulk sequencing lacks cellular resolution; reuse is ideal for tissue-level or condition-level transcriptomic studies of Aedes.

Data type / assay
bulk-RNA-seq
Organism
Aedes aegypti
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2122849585 reported
total reads 24974701 reported
n content pct 0.003 measured
pct q20 bases 93 measured
pct q30 bases 90.3 measured
gc content pct 44.2 measured
mean read length 85 measured
mean base quality 33.6 measured
adapter content pct 0.06 measured
duplication rate pct 59.82 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.3 measured ×1 100%
mean base quality 33.6 measured ×0.6 93%
adapter content pct 0.06 measured ×0.4 100%
duplication rate pct 59.82 measured ×0.4 34%
QC cost 41 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0