SRR11363957

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

96/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Homo sapiens

Instrument

Sequel II

Platform

PACBIO_SMRT

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 6.73 measured

checksum ok yes reported

total bases 458827405576 reported

total reads 28544460 reported

mean coverage 148 extrapolated

n content pct 0 measured

sampled bases 173955500 measured

sampled reads 10464 measured

gc content pct 40.9 measured

polyg tail pct 0.21 measured

read length sd 10352 measured

read length max 215526 measured

read length min 61 measured

read length n50 17873 measured

max base quality 0 measured

mean read length 16624.2 measured

max n pct per pos 0 measured

pct reads lt 100bp 0.07 measured

read length median 16836 measured

adapter content pct 0 measured

duplication rate pct 0.3 measured

overrepresented top pct 0.28 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 96/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 148 extrapolated ×1.2 100%

read length n50 17873 measured ×1 88%

duplication rate pct 0.3 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 42 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0