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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
67/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Hormaphis cornu
Instrument
NextSeq 550
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
6214308000
reported
total reads
20714360
reported
n content pct
0.002
measured
pct q20 bases
88.4
measured
pct q30 bases
86.1
measured
gc content pct
46.4
measured
mean read length
150
measured
mean base quality
32.8
measured
adapter content pct
16
measured
duplication rate pct
47.56
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 67/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
86.1
measured
×1
81%
mean base quality
32.8
measured
×0.6
80%
adapter content pct
16
measured
×0.4
22%
duplication rate pct
47.56
measured
×0.4
61%
QC cost
26 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0