Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRR11428761

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

NextSeq 550 bulk RNA-seq from Hormaphis cornu produces ~38.6 million short reads (7.72 billion bases, 96% Q30), high coverage at excellent quality enabling comprehensive transcriptome profiling. This dataset supports sensitive differential expression studies in this aphid species. Bulk sequencing lacks cell-type specificity; reuse is excellent for tissue-level or developmental transcriptomic studies of plant-aphid interactions.

Data type / assay
bulk-RNA-seq
Organism
Hormaphis cornu
Instrument
NextSeq 550
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 7717146800 reported
total reads 38585734 reported
n content pct 0.047 measured
pct q20 bases 97.7 measured
pct q30 bases 96 measured
gc content pct 33.2 measured
mean read length 100 measured
mean base quality 38.1 measured
adapter content pct 3.62 measured
duplication rate pct 10.65 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96 measured ×1 100%
mean base quality 38.1 measured ×0.6 100%
adapter content pct 3.62 measured ×0.4 91%
duplication rate pct 10.65 measured ×0.4 100%
QC cost 19 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0