SRR11440740

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

NextSeq 500 bulk RNA-seq from Aedes aegypti generates ~3.23 million short reads (487 million bases, 95.6% Q30), limited coverage but good quality for focused studies. This undersized dataset restricts genome-wide expression profiling. Reuse suits validation of candidate genes in the disease vector; combining with deeper samples enhances transcriptomic power.

Data type / assay

bulk-RNA-seq

Organism

Aedes aegypti

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 487222261 reported

total reads 3230921 reported

n content pct 0.007 measured

pct q20 bases 97 measured

pct q30 bases 95.6 measured

gc content pct 46.6 measured

mean read length 75.4 measured

mean base quality 34.7 measured

adapter content pct 0.01 measured

duplication rate pct 72.02 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.6 measured ×1 100%

mean base quality 34.7 measured ×0.6 100%

adapter content pct 0.01 measured ×0.4 100%

duplication rate pct 72.02 measured ×0.4 7%

QC cost 39 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0