Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR11528846

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

HiSeq 2500 bulk RNA-seq from Polypedilum vanderplanki (chironomid fly) yields ~9.02 million short reads (459 million bases, 98.4% Q30), moderate coverage at exceptional quality enabling reliable transcript detection. This dataset supports differential expression analysis and detection of moderately-expressed genes. Bulk sequencing lacks cell-type specificity; reuse suits tissue-level or developmental transcriptomic studies of this desiccation-tolerant organism.

Data type / assay
bulk-RNA-seq
Organism
Polypedilum vanderplanki
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 459854709 reported
total reads 9016759 reported
n content pct 0.001 measured
pct q20 bases 99.2 measured
pct q30 bases 98.4 measured
gc content pct 37.2 measured
mean read length 51 measured
mean base quality 37.2 measured
adapter content pct 0.02 measured
duplication rate pct 35.56 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.4 measured ×1 100%
mean base quality 37.2 measured ×0.6 100%
adapter content pct 0.02 measured ×0.4 100%
duplication rate pct 35.56 measured ×0.4 88%
QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0