Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR1159912

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

HiSeq 2000 bulk RNA-seq from Drosophila simulans yields ~44.4 million short reads (2.27 billion bases, 90.4% Q30), high coverage supporting comprehensive transcriptome profiling in this model Drosophilid. This dataset enables sensitive differential expression studies and detection of moderate to low-abundance transcripts. Bulk sequencing lacks cell-type specificity; reuse is excellent for tissue-level or developmental transcriptomic studies of Drosophila comparative biology.

Data type / assay
bulk-RNA-seq
Organism
Drosophila simulans
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2265932448 reported
total reads 44430048 reported
n content pct 0.007 measured
pct q20 bases 94.1 measured
pct q30 bases 90.4 measured
gc content pct 52.5 measured
mean read length 51 measured
mean base quality 35.8 measured
adapter content pct 0.07 measured
duplication rate pct 18.4 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.4 measured ×1 100%
mean base quality 35.8 measured ×0.6 100%
adapter content pct 0.07 measured ×0.4 100%
duplication rate pct 18.4 measured ×0.4 100%
QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0