Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR1161697

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

HiSeq 2000 bulk RNA-seq from Tribolium castaneum yields ~15.7 million short reads (1.37 billion bases, 93.9% Q30), moderate coverage at high quality enabling transcript abundance profiling in this beetle model. This dataset supports differential expression studies and detection of moderate to abundant genes. Bulk sequencing lacks cell-type specificity; reuse suits tissue-level or developmental transcriptomic studies of Tribolium.

Data type / assay
bulk-RNA-seq
Organism
Tribolium castaneum
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1367325147 reported
total reads 15716381 reported
n content pct 0.027 measured
pct q20 bases 95.4 measured
pct q30 bases 93.9 measured
gc content pct 47.2 measured
mean read length 87 measured
mean base quality 36.3 measured
adapter content pct 0.25 measured
duplication rate pct 24.87 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.9 measured ×1 100%
mean base quality 36.3 measured ×0.6 100%
adapter content pct 0.25 measured ×0.4 100%
duplication rate pct 24.87 measured ×0.4 100%
QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0