Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR1161700

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Tribolium castaneum RNA-seq from HiSeq 2000 with 18M reads and exceptionally high quality (97.1% Q20, 95.7% Q30). Although modest depth, the excellent Q30 rate (highest in the Tribolium set) makes this dataset particularly suitable for variant discovery, novel isoform characterization, or quality-sensitive applications in this reference beetle genome.

Data type / assay
bulk-RNA-seq
Organism
Tribolium castaneum
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1553579793 reported
total reads 17857239 reported
n content pct 0.03 measured
pct q20 bases 97.1 measured
pct q30 bases 95.7 measured
gc content pct 47 measured
mean read length 87 measured
mean base quality 36.9 measured
adapter content pct 0.16 measured
duplication rate pct 22.52 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.7 measured ×1 100%
mean base quality 36.9 measured ×0.6 100%
adapter content pct 0.16 measured ×0.4 100%
duplication rate pct 22.52 measured ×0.4 100%
QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0