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SRR1163657
SRAProvenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
64/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
PacBio RS
Platform
PACBIO_SMRT
Read type
hybrid (short+long)
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
7.87
measured
checksum ok
yes
reported
total bases
675710372
reported
total reads
586527
reported
n content pct
0
measured
pct q20 bases
87.4
measured
pct q30 bases
72.7
measured
pct reads q30
79.8
measured
sampled bases
53042844
measured
sampled reads
48677
measured
gc content pct
46.8
measured
polyg tail pct
0
measured
read length sd
433.4
measured
quality dropoff
2.8
measured
read length max
5347
measured
read length min
274
measured
read length n50
1170
measured
max base quality
80
measured
mean read length
1089.7
measured
max n pct per pos
0
measured
mean base quality
47
measured
pct reads lt 100bp
0
measured
read length median
979
measured
adapter content pct
0
measured
median read quality
52.5
measured
duplication rate pct
10.45
measured
overrepresented top pct
0.89
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 64/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
72.7
measured
×1
14%
mean base quality
47
measured
×0.6
100%
adapter content pct
0
measured
×0.4
100%
duplication rate pct
10.45
measured
×0.4
100%
QC cost
20 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0