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SRR1163658
SRAProvenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
62/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
PacBio RS
Platform
PACBIO_SMRT
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
7.83
measured
checksum ok
yes
reported
total bases
656502692
reported
total reads
573590
reported
n content pct
0
measured
pct q20 bases
84.5
measured
pct q30 bases
67.3
measured
pct reads q30
73.5
measured
sampled bases
50767986
measured
sampled reads
45067
measured
gc content pct
46.9
measured
polyg tail pct
0
measured
read length sd
430.7
measured
quality dropoff
1.4
measured
read length max
4590
measured
read length min
119
measured
read length n50
1204
measured
max base quality
80
measured
mean read length
1126.5
measured
max n pct per pos
0
measured
mean base quality
43.1
measured
pct reads lt 100bp
0
measured
read length median
1018
measured
adapter content pct
0
measured
median read quality
44.7
measured
duplication rate pct
10.22
measured
overrepresented top pct
0.74
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 62/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
read length n50
1204
measured
×1
0%
mean base quality
43.1
measured
×0.8
100%
adapter content pct
0
measured
×0.4
100%
duplication rate pct
10.22
measured
×0.4
100%
QC cost
10 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0