Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR1166491

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

82/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

HiSeq 2000 bulk RNA-seq from Aedes aegypti yields ~66.9 million short reads (6.75 billion bases, 84.3% Q30), very high coverage enabling comprehensive transcriptome profiling in this disease vector with lower quality requiring filtering. This dataset supports differential expression studies after quality control; sensitive detection requires careful error handling. Bulk sequencing lacks cell-type specificity; reuse suits tissue-level or condition-level transcriptomic studies of Aedes.

Data type / assay
bulk-RNA-seq
Organism
Aedes aegypti
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 6751861110 reported
total reads 66850110 reported
n content pct 0.062 measured
pct q20 bases 90.4 measured
pct q30 bases 84.3 measured
gc content pct 45.6 measured
mean read length 101 measured
mean base quality 33.2 measured
adapter content pct 5.35 measured
duplication rate pct 21.44 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 82/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84.3 measured ×1 72%
mean base quality 33.2 measured ×0.6 87%
adapter content pct 5.35 measured ×0.4 81%
duplication rate pct 21.44 measured ×0.4 100%
QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0