Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR11671131

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

74/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

HiSeq 2000 bulk RNA-seq from Apis mellifera yields ~37.3 million short reads (7.52 billion bases, 85.5% Q30), high coverage enabling comprehensive transcriptome profiling in the honey bee. This dataset supports differential expression studies and detection of moderate to low-abundance transcripts. Bulk sequencing lacks cell-type specificity; reuse is excellent for tissue-level or developmental transcriptomic studies of bee biology and social behavior.

Data type / assay
bulk-RNA-seq
Organism
Apis mellifera
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 7524679800 reported
total reads 37277868 reported
n content pct 0 measured
pct q20 bases 95.2 measured
pct q30 bases 85.5 measured
gc content pct 53.9 measured
mean read length 100.9 measured
mean base quality 33.9 measured
adapter content pct 0 measured
duplication rate pct 83.73 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 74/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.5 measured ×1 78%
mean base quality 33.9 measured ×0.6 98%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 83.73 measured ×0.4 0%
QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0