SRR1167475

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

77/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Aedes aegypti HiSeq 2000 RNA-seq with 119M reads and good quality (88.9% Q20, 82% Q30). Deep coverage is well-suited for comprehensive transcript quantification and detection of condition-specific expression in mosquito samples. Slightly elevated N content (0.078%) is minor; standard quality filtering will address it.

Data type / assay

bulk-RNA-seq

Organism

Aedes aegypti

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 12063311528 reported

total reads 119438728 reported

n content pct 0.078 measured

pct q20 bases 88.9 measured

pct q30 bases 82 measured

gc content pct 45 measured

mean read length 101 measured

mean base quality 32.5 measured

adapter content pct 0.32 measured

duplication rate pct 21.23 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 77/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 82 measured ×1 60%

mean base quality 32.5 measured ×0.6 75%

adapter content pct 0.32 measured ×0.4 100%

duplication rate pct 21.23 measured ×0.4 100%

QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0