Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR1167549

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

HiSeq 2000 bulk RNA-seq from Aedes aegypti produces ~45.3 million short reads (9.14 billion bases, 91.2% Q30), very high coverage with elevated N-content (0.221%) enabling comprehensive transcriptome profiling. This dataset supports sensitive differential expression studies after quality filtering. Bulk sequencing lacks cell-type specificity; reuse is excellent for tissue-level or condition-level transcriptomic studies of Aedes.

Data type / assay
bulk-RNA-seq
Organism
Aedes aegypti
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 9142764420 reported
total reads 45261210 reported
n content pct 0.221 measured
pct q20 bases 95.1 measured
pct q30 bases 91.2 measured
gc content pct 45 measured
mean read length 101 measured
mean base quality 35.3 measured
adapter content pct 0.12 measured
duplication rate pct 14.75 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.2 measured ×1 100%
mean base quality 35.3 measured ×0.6 100%
adapter content pct 0.12 measured ×0.4 100%
duplication rate pct 14.75 measured ×0.4 100%
QC cost 11 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0