Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR11678567

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

71/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

HiSeq 4000 bulk RNA-seq from Drosophila mojavensis yields ~33 million short reads (6.59 billion bases, 79.5% Q30), high coverage but with lower Q30 requiring quality filtering. This dataset supports transcript abundance profiling after careful quality control; differential expression studies are feasible. Bulk sequencing lacks cell-type specificity; reuse suits tissue-level or developmental transcriptomic studies of Drosophila.

Data type / assay
bulk-RNA-seq
Organism
Drosophila mojavensis
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 6591082000 reported
total reads 32955410 reported
n content pct 0.001 measured
pct q20 bases 88.8 measured
pct q30 bases 79.5 measured
gc content pct 43 measured
mean read length 100 measured
mean base quality 32.9 measured
adapter content pct 0.62 measured
duplication rate pct 36.65 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 71/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 79.5 measured ×1 48%
mean base quality 32.9 measured ×0.6 82%
adapter content pct 0.62 measured ×0.4 100%
duplication rate pct 36.65 measured ×0.4 85%
QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0